MaghrebDataLibMedV2, Main, Exploration, bibRecord, 000223

Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose

Identifieur interne : 000223 ( Main/Exploration ); précédent : 000222; suivant : 000224

Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose

Auteurs : Rim Driss Limam [France, Tunisie] ; Rakia Chouari [Tunisie] ; Laurent Mazéas [France] ; Ting-Di Wu [France] ; Tianlun Li [France] ; Julien Grossin-Debattista [France] ; Jean-Luc Guerquin-Kern [France] ; Mouldi Saidi [Tunisie] ; Ahmed Landoulsi [Tunisie] ; Abdelghani Sghir [France] ; Théodore Bouchez [France]

Source :

MicrobiologyOpen [ 2045-8827 ] ; 2014.

RBID : PMC:3996565

Descripteurs français

KwdFr :
- Anaérobiose (MeSH), Bactéries (génétique), Bactéries (isolement et purification), Bactéries (métabolisme), Biote (MeSH), Cellulose (métabolisme), Eaux usées (microbiologie), Hybridation fluorescente in situ (MeSH), Isotopes du carbone (métabolisme), Marquage isotopique (MeSH).
MESH :
- génétique : Bactéries.
- isolement et purification : Bactéries.
- microbiologie : Eaux usées.
- métabolisme : Bactéries, Cellulose, Isotopes du carbone.
- Anaérobiose, Biote, Hybridation fluorescente in situ, Marquage isotopique.

English descriptors

KwdEn :
- Anaerobiosis (MeSH), Bacteria (genetics), Bacteria (isolation & purification), Bacteria (metabolism), Biota (MeSH), Carbon Isotopes (metabolism), Cellulose (metabolism), In Situ Hybridization, Fluorescence (MeSH), Isotope Labeling (MeSH), Waste Water (microbiology).
MESH :
- chemical , metabolism : Carbon Isotopes, Cellulose.
- genetics : Bacteria.
- isolation & purification : Bacteria.
- metabolism : Bacteria.
- chemical , microbiology : Waste Water.
- Anaerobiosis, Biota, In Situ Hybridization, Fluorescence, Isotope Labeling.

Abstract

Clones of the WWE1 (Waste Water of Evry 1) candidate division were retrieved during the exploration of the bacterial diversity of an anaerobic mesophilic (35 ± 0.5°C) digester. In order to investigate the metabolic function of WWE1 members, a 16S rRNA gene-based stable isotope probing (SIP) method was used. Eighty-seven percent of 16S r rRNA gene sequences affiliated to WWE1 candidate division were retrieved in a clone library obtained after polymerase chain reaction (PCR) amplification of enriched DNA fraction from anaerobic municipal solid waste samples incubated with ¹³C-cellulose, at the end of the incubation (day 63) using a Pla46F-1390R primer pair. The design of a specific WWE1 probe associated with the fluorescence in situ hybridization (FISH) technique corroborated the abundant representation of WWE1 members in our ¹³C-cellulose incubations. Secondary ion mass spectrometry–in situ hybridization (SIMSISH) using an iodine-labeled oligonucleotide probe combined with high-resolution nanometer-scale SIMS (NanoSIMS) observation confirmed the isotopic enrichment of members of WWE1 candidate division. The ¹³C apparent isotopic composition of hybridized WWE1 cells reached the value of about 40% early during the cellulose degradation process, suggesting that these bacteria play a role either in an extracellular cellulose hydrolysis process and/or in the uptake fermentation products.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996565

DOI: 10.1002/mbo3.144
PubMed: 24497501
PubMed Central: 3996565

Affiliations:

France, Tunisie

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose</title>
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<author><name sortKey="Mazeas, Laurent" sort="Mazeas, Laurent" uniqKey="Mazeas L" first="Laurent" last="Mazéas">Laurent Mazéas</name>
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<author><name sortKey="Wu, Ting Di" sort="Wu, Ting Di" uniqKey="Wu T" first="Ting-Di" last="Wu">Ting-Di Wu</name>
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<author><name sortKey="Li, Tianlun" sort="Li, Tianlun" uniqKey="Li T" first="Tianlun" last="Li">Tianlun Li</name>
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<author><name sortKey="Grossin Debattista, Julien" sort="Grossin Debattista, Julien" uniqKey="Grossin Debattista J" first="Julien" last="Grossin-Debattista">Julien Grossin-Debattista</name>
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<author><name sortKey="Guerquin Kern, Jean Luc" sort="Guerquin Kern, Jean Luc" uniqKey="Guerquin Kern J" first="Jean-Luc" last="Guerquin-Kern">Jean-Luc Guerquin-Kern</name>
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<author><name sortKey="Sghir, Abdelghani" sort="Sghir, Abdelghani" uniqKey="Sghir A" first="Abdelghani" last="Sghir">Abdelghani Sghir</name>
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<author><name sortKey="Bouchez, Theodore" sort="Bouchez, Theodore" uniqKey="Bouchez T" first="Théodore" last="Bouchez">Théodore Bouchez</name>
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<series><title level="j">MicrobiologyOpen</title>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Anaerobiosis (MeSH)</term>
<term>Bacteria (genetics)</term>
<term>Bacteria (isolation & purification)</term>
<term>Bacteria (metabolism)</term>
<term>Biota (MeSH)</term>
<term>Carbon Isotopes (metabolism)</term>
<term>Cellulose (metabolism)</term>
<term>In Situ Hybridization, Fluorescence (MeSH)</term>
<term>Isotope Labeling (MeSH)</term>
<term>Waste Water (microbiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Anaérobiose (MeSH)</term>
<term>Bactéries (génétique)</term>
<term>Bactéries (isolement et purification)</term>
<term>Bactéries (métabolisme)</term>
<term>Biote (MeSH)</term>
<term>Cellulose (métabolisme)</term>
<term>Eaux usées (microbiologie)</term>
<term>Hybridation fluorescente in situ (MeSH)</term>
<term>Isotopes du carbone (métabolisme)</term>
<term>Marquage isotopique (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Carbon Isotopes</term>
<term>Cellulose</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bactéries</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Bactéries</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Bacteria</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Eaux usées</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="microbiology" xml:lang="en"><term>Waste Water</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bactéries</term>
<term>Cellulose</term>
<term>Isotopes du carbone</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Anaerobiosis</term>
<term>Biota</term>
<term>In Situ Hybridization, Fluorescence</term>
<term>Isotope Labeling</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Anaérobiose</term>
<term>Biote</term>
<term>Hybridation fluorescente in situ</term>
<term>Marquage isotopique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Clones of the WWE1 (Waste Water of Evry 1) candidate division were retrieved during the exploration of the bacterial diversity of an anaerobic mesophilic (35 ± 0.5°C) digester. In order to investigate the metabolic function of WWE1 members, a 16S rRNA gene-based stable isotope probing (SIP) method was used. Eighty-seven percent of 16S r rRNA gene sequences affiliated to WWE1 candidate division were retrieved in a clone library obtained after polymerase chain reaction (PCR) amplification of enriched DNA fraction from anaerobic municipal solid waste samples incubated with <sup>13</sup>
C-cellulose, at the end of the incubation (day 63) using a Pla46F-1390R primer pair. The design of a specific WWE1 probe associated with the fluorescence in situ hybridization (FISH) technique corroborated the abundant representation of WWE1 members in our <sup>13</sup>
C-cellulose incubations. Secondary ion mass spectrometry–in situ hybridization (SIMSISH) using an iodine-labeled oligonucleotide probe combined with high-resolution nanometer-scale SIMS (NanoSIMS) observation confirmed the isotopic enrichment of members of WWE1 candidate division. The <sup>13</sup>
C apparent isotopic composition of hybridized WWE1 cells reached the value of about 40% early during the cellulose degradation process, suggesting that these bacteria play a role either in an extracellular cellulose hydrolysis process and/or in the uptake fermentation products.</p>
</div>
</front>
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</div1>
</back>
</TEI>
<affiliations><list><country><li>France</li>
<li>Tunisie</li>
</country>
</list>
<tree><country name="France"><noRegion><name sortKey="Limam, Rim Driss" sort="Limam, Rim Driss" uniqKey="Limam R" first="Rim Driss" last="Limam">Rim Driss Limam</name>
</noRegion>
<name sortKey="Bouchez, Theodore" sort="Bouchez, Theodore" uniqKey="Bouchez T" first="Théodore" last="Bouchez">Théodore Bouchez</name>
<name sortKey="Grossin Debattista, Julien" sort="Grossin Debattista, Julien" uniqKey="Grossin Debattista J" first="Julien" last="Grossin-Debattista">Julien Grossin-Debattista</name>
<name sortKey="Guerquin Kern, Jean Luc" sort="Guerquin Kern, Jean Luc" uniqKey="Guerquin Kern J" first="Jean-Luc" last="Guerquin-Kern">Jean-Luc Guerquin-Kern</name>
<name sortKey="Guerquin Kern, Jean Luc" sort="Guerquin Kern, Jean Luc" uniqKey="Guerquin Kern J" first="Jean-Luc" last="Guerquin-Kern">Jean-Luc Guerquin-Kern</name>
<name sortKey="Li, Tianlun" sort="Li, Tianlun" uniqKey="Li T" first="Tianlun" last="Li">Tianlun Li</name>
<name sortKey="Limam, Rim Driss" sort="Limam, Rim Driss" uniqKey="Limam R" first="Rim Driss" last="Limam">Rim Driss Limam</name>
<name sortKey="Limam, Rim Driss" sort="Limam, Rim Driss" uniqKey="Limam R" first="Rim Driss" last="Limam">Rim Driss Limam</name>
<name sortKey="Mazeas, Laurent" sort="Mazeas, Laurent" uniqKey="Mazeas L" first="Laurent" last="Mazéas">Laurent Mazéas</name>
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<name sortKey="Sghir, Abdelghani" sort="Sghir, Abdelghani" uniqKey="Sghir A" first="Abdelghani" last="Sghir">Abdelghani Sghir</name>
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<name sortKey="Wu, Ting Di" sort="Wu, Ting Di" uniqKey="Wu T" first="Ting-Di" last="Wu">Ting-Di Wu</name>
</country>
<country name="Tunisie"><noRegion><name sortKey="Limam, Rim Driss" sort="Limam, Rim Driss" uniqKey="Limam R" first="Rim Driss" last="Limam">Rim Driss Limam</name>
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<name sortKey="Chouari, Rakia" sort="Chouari, Rakia" uniqKey="Chouari R" first="Rakia" last="Chouari">Rakia Chouari</name>
<name sortKey="Landoulsi, Ahmed" sort="Landoulsi, Ahmed" uniqKey="Landoulsi A" first="Ahmed" last="Landoulsi">Ahmed Landoulsi</name>
<name sortKey="Limam, Rim Driss" sort="Limam, Rim Driss" uniqKey="Limam R" first="Rim Driss" last="Limam">Rim Driss Limam</name>
<name sortKey="Saidi, Mouldi" sort="Saidi, Mouldi" uniqKey="Saidi M" first="Mouldi" last="Saidi">Mouldi Saidi</name>
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{{Explor lien
   |wiki=    Wicri/Sante
   |area=    MaghrebDataLibMedV2
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:3996565
   |texte=   Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose
}}

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Serveur sur les données et bibliothèques médicales au Maghreb (version finale)

Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose

Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose

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English descriptors

Abstract

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Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur sur les données et bibliothèques médicales au Maghreb (version finale)
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.